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‎CITATION.cff

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title: "The Python Simulator for Cellular Systems: PySCeS"
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version: "1.2.0"
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repository-code: "https://github.com/PySCeS/pysces/tree/1.2.0"
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date-released: 2023-12-14
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date-released: 2024-02-14
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doi: "10.5281/zenodo.2600905"
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license: "BSD-3-Clause"
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url: https://pysces.github.io

‎README.md

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‎docs

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‎pysces/PyscesConfig.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/PyscesContrib.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/PyscesContribUser.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/PyscesInterfaces.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/PyscesJWSParse.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesLink.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesMiniModel.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesModel.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesModelMap.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesParScan.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Johann Rohwer (jrohwer@users.sourceforge.net)
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‎pysces/PyscesParse.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesPlot.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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‎pysces/PyscesPlot2.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesSBML.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesSED.py

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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesScan.py

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‎pysces/PyscesStoich.py

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‎pysces/PyscesTest.py

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‎pysces/PyscesUtils.py

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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/PyscesWeb.py

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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/__init__.py

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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Permission to use, modify, and distribute this software is given under the
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terms of the PySceS (BSD style) license. See LICENSE.txt that came with
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this distribution for specifics.
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NO WARRANTY IS EXPRESSED OR IMPLIED. USE AT YOUR OWN RISK.
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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"""
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)
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print('* http://pysces.sourceforge.net *')
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## print '* Somewhere In Time *'
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print('* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2023 *')
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print('* Copyright(C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr, 2004-2024 *')
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print('* Triple-J Group for Molecular Cell Physiology *')
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print('* Stellenbosch University, ZA and VU University Amsterdam, NL *')
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print('* PySCeS is distributed under the PySCeS (BSD style) licence, see *')

‎pysces/_multicorescan.py

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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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‎pysces/contrib/__init__.py

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‎pysces/core2/InfixParser.py

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‎pysces/core2/PyscesCore2.py

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‎pysces/core2/PyscesCore2Interfaces.py

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‎pysces/core2/PyscesCore2Modules.py

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‎pysces/core2/__init__.py

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‎pysces/kraken/Kraken.py

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‎pysces/kraken/KrakenDataTools.py

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‎pysces/kraken/KrakenNET.py

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‎pysces/kraken/KrakenServer.py

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‎pysces/kraken/controllers/kraken_intersect.py

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‎pysces/kraken/startup.py

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‎pysces/lib/__init__.py

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‎pysces/metatool/__init__.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/nleq2/4.2/__init__.py

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PySCeS - Python Simulator for Cellular Systems
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(http://pysces.sourceforge.net)
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Copyright (C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr
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Stellenbosch, 2004-2023.
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Stellenbosch, 2004-2024.
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Triple-J Group for Molecular Cell Physiology
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Stellenbosch University, South Africa
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Author: Brett G. Olivier

‎pysces/nleq2/__init__.py

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"""
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PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
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Copyright (C) 2004-2023 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Copyright (C) 2004-2024 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
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Brett G. Olivier (bgoli@users.sourceforge.net)
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Triple-J Group for Molecular Cell Physiology

‎pysces/pitcon/__init__.py

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PySCeS - Python Simulator for Cellular Systems
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(http://pysces.sourceforge.net)
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Copyright (C) B.G. Olivier, J.M. Rohwer, J.-H.S. Hofmeyr
5-
Stellenbosch, 2004-2023.
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Stellenbosch, 2004-2024.
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Triple-J Group for Molecular Cell Physiology
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Stellenbosch University, South Africa
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Author: Brett G. Olivier

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