Update public website

.github/workflows/deploy_main_preview.yml

@@ -15,6 +15,13 @@ jobs:
       packages: write
 
     steps:
+      - name: Get Actions user id
+        id: get_uid
+        run: |
+          actions_user_id=`id -u $USER`
+          echo $actions_user_id
+          echo "uid=$actions_user_id" >> $GITHUB_OUTPUT
+
       - name: checkout
         uses: actions/checkout@v2
         with:
@@ -24,6 +31,11 @@ jobs:
         run: |
           ./build_html.sh
 
+      - name: Reset ownership of workspace after build
+        uses: peter-murray/reset-workspace-ownership-action@v1
+        with:
+          user_id: ${{ steps.get_uid.outputs.uid }}
+
        # Push the book's HTML to github-pages
       - name: GitHub Pages action
         uses: peaceiris/actions-gh-pages@v3.8.0

.github/workflows/deploy_pr_preview.yml

@@ -23,7 +23,14 @@ jobs:
           checkName: "Rebuild docker image"
           ref: ${{ github.event.pull_request.head.sha }}
           timeoutSeconds: 60000
-
+
+      - name: Get Actions user id
+        id: get_uid
+        run: |
+          actions_user_id=`id -u $USER`
+          echo $actions_user_id
+          echo "uid=$actions_user_id" >> $GITHUB_OUTPUT
+
       - name: Checkout the repo
         uses: actions/checkout@v2
         with:
@@ -34,6 +41,11 @@ jobs:
         run: |
           ./build_html.sh
 
+      - name: Reset ownership of workspace after build
+        uses: peter-murray/reset-workspace-ownership-action@v1
+        with:
+          user_id: ${{ steps.get_uid.outputs.uid }}
+
        # Push the book's HTML to github-pages
       - name: GitHub Pages action
         uses: peaceiris/actions-gh-pages@v3.8.0
@@ -44,11 +56,35 @@ jobs:
           destination_dir: pull${{ github.event.number }}
           # force_orphan: true # once peaceiris updates to v4, change this to true and keep_files: true for the PR / main branch deploy previews
 
+      - name: Checkout the gh-pages branch
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: '0'
+          ref: 'gh-pages'
+
+      - name: Run website diff
+        run: |
+          rustup update
+          pip install --upgrade pip
+          pip install website_diff
+          rm -rf diff${{ github.event.number }}
+          website_diff --old dev --new pull${{ github.event.number }} --diff diff${{ github.event.number }}
+
+      - name: GitHub Pages action to push diff
+        uses: peaceiris/actions-gh-pages@v3.8.0
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: diff${{ github.event.number }}
+          keep_files: true
+          destination_dir: diff${{ github.event.number }}
+          # force_orphan: true # once peaceiris updates to v4, change this to true and keep_files: true for the PR / main branch deploy previews
+
       - name: Post URLS to PR thread
         uses: mshick/add-pr-comment@v2.8.1
         with:
           message: |
               Hello! I've built a preview of your PR so that you can compare it to the current `main` branch.
               * PR deploy preview available [here](https://python.datasciencebook.ca/pull${{ github.event.number }}/index.html)
+              * PR diff with `main` available [here](https://python.datasciencebook.ca/diff${{ github.event.number }}/index.html)
               * Current `main` deploy preview available [here](https://python.datasciencebook.ca/dev/index.html)
               * Public production build available [here](https://python.datasciencebook.ca)

.github/workflows/update_book.yml

@@ -0,0 +1,41 @@
+name: Rebuild and deploy book to gh-pages branch
+on:
+  push:
+    branches:
+      - production
+    paths:
+      - 'source/**'
+      - 'build_html.sh'
+
+jobs:
+  deploy-book:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      packages: write
+
+    steps:
+      - name: checkout gh-pages
+        uses: actions/checkout@v2
+        with:
+          ref: 'gh-pages'
+
+      - name: Copy contents of dev/ to home folder
+        run: |
+          yes | cp -rf dev ${{ runner.home }}
+
+      # Push update website to dev/ and clean out old commits
+      - name: Update website to contents of dev, remove all old commits and subpages
+        uses: peaceiris/actions-gh-pages@v3.8.0
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: dev/
+          force_orphan: true # this will clean up all previous PR previews / main branch preview
+          cname: datasciencebook.ca
+
+      - name: copy dev/ website back in
+        run: |
+          yes | cp -rf ${{ runner.home }}/dev dev
+
+      - name: push the result to gh-pages
+        uses: stefanzweifel/git-auto-commit-action@v5

build_html.sh

@@ -1,2 +1,3 @@
 chmod -R o+w source/
 docker run --rm -v $(pwd):/home/jovyan ubcdsci/py-intro-to-ds:20231112004031dd2207 /bin/bash -c "jupyter-book build source"
+

source/_config.yml

@@ -1,5 +1,5 @@
 # Book settings
-title: "Data Science: A First Introduction (Python Edition)"
+title: "Data Science: A First Introduction with Python"
 author: "Tiffany Timbers, Trevor Campbell, Melissa Lee, Joel Ostblom, and Lindsey Heagy"
 copyright: "2022" # Copyright year to be placed in the footer
 logo: "" # A path to the book logo

source/acknowledgements.md

@@ -50,7 +50,7 @@ is reflected in the content of this book.
 ## Acknowledgments for the Python Edition
 
 We'd like to thank everyone that has contributed to the development of
-[*Data Science: A First Introduction (Python Edition)*](https://python.datasciencebook.ca).
+[*Data Science: A First Introduction with Python*](https://python.datasciencebook.ca).
 This is an open source Python translation of the original
 book, which focused on the R programming language. Both of these books are
 used to teach DSCI 100 at the University of British Columbia (UBC).

source/index.md

@@ -17,19 +17,27 @@ kernelspec:
 
 # Data Science
 
-## *A First Introduction (Python Edition)*
+## *A First Introduction with Python*
 
 *Tiffany Timbers, Trevor Campbell, Melissa Lee, Joel Ostblom, Lindsey Heagy*
 
 ### Welcome!
 
-This is the [website](https://python.datasciencebook.ca) for *Data Science: A First Introduction (Python Edition)*.
+This is the [website](https://python.datasciencebook.ca) for *Data Science: A First Introduction with Python*.
 You can read the web version of the book on this site. Click a section in the table of contents
 on the left side of the page to navigate to it. If you are on a mobile device,
 you may need to open the table of contents first by clicking the menu button on
-the top left of the page.
+the top left of the page. You can purchase a PDF or print copy of the book on the [CRC Press website](https://www.routledge.com/Data-Science-A-First-Introduction-with-Python/Timbers-Campbell-Lee-Ostblom-Heagy/p/book/9781032572239) or on [Amazon](https://www.amazon.com/Data-Science-Introduction-Python-Chapman/dp/103257223X).
 
-For the R version of the textbook, please visit https://datasciencebook.ca.
+For the R version of the textbook, please visit [https://datasciencebook.ca](https://datasciencebook.ca).
+
+This book is listed in a number of open educational resource (OER) collections:
+
+- [The University of British Columbia OER collection](https://oer.open.ubc.ca/data-science-a-first-introduction-python-version/)
+- [The OER Commons](https://oercommons.org/courses/data-science-a-first-introduction-with-python)
+- [MERLOT](https://merlot.org/merlot/viewMaterial.htm?id=773420157)
+
+<img src="img/frontmatter/ds-a-first-intro-cover.jpg" width="400">
 
 <img src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png">
 

source/version-control.md

@@ -1113,9 +1113,8 @@ and guidance that the worksheets provide will function as intended.
 Now that you've picked up the basics of version control with Git and GitHub,
 you can expand your knowledge through the resources listed below:
 
-- GitHub's [guides website](https://guides.github.com/) and [YouTube
-  channel](https://www.youtube.com/githubguides) are great resources to take the next steps in
-  learning about Git and GitHub.
+- GitHub's [guides website](https://docs.github.com/) is a great resource for
+  learning more about Git and GitHub.
 - [Good enough practices in scientific
   computing](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510#sec014)
   {cite:p}`wilson2014best` provides more advice on useful workflows and "good enough"

source/viz.md

@@ -1549,7 +1549,7 @@ To fix this issue we can convert the `Expt` variable into a `nominal`
 to the `Expt` variable. Adding the `:N` suffix ensures that `altair`
 will treat a variable as a categorical variable, and
 hence use a discrete color map in visualizations
-([read more about data types in the altair documentation](https://altair-viz.github.io/user_guide/encoding.html#encoding-data-types)).
+([read more about data types in the altair documentation](https://altair-viz.github.io/user_guide/encodings/index.html#encoding-data-types)).
 We also add the `stack(False)` method on the `y` encoding so
 that the bars are not stacked on top of each other,
 but instead share the same baseline.