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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 411 46

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 248 36

  3. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 146 48

  4. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 146 26

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 92 28

Repositories

Showing 10 of 184 repositories
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 8 BSD-3-Clause 1 10 0 Updated Apr 22, 2025
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    Vue 5 8 3 27 Updated Apr 22, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 328 91 37 Updated Apr 22, 2025
  • openjpeg Public Forked from uclouvain/openjpeg

    Official repository of the OpenJPEG project

    seung-lab/openjpeg’s past year of commit activity
    C 0 480 0 0 Updated Apr 20, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 54 LGPL-3.0 6 0 0 Updated Apr 20, 2025
  • tinybrain Public

    Image pyramid generation for grayscale and segmentation image resize.

    seung-lab/tinybrain’s past year of commit activity
    Python 9 GPL-3.0 0 5 0 Updated Apr 18, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 42 BSD-3-Clause 8 14 0 Updated Apr 18, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 146 BSD-3-Clause 48 83 6 Updated Apr 16, 2025
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.

    seung-lab/fastmorph’s past year of commit activity
    C++ 13 LGPL-3.0 3 3 0 Updated Apr 15, 2025
  • ngl_bench Public

    Manipulating neuroglancer and unraveling connectomes is an agentic problem.

    seung-lab/ngl_bench’s past year of commit activity
    0 0 0 0 Updated Apr 7, 2025