1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Docker for 4DN Hi-C processing pipeline

Data portal for submitting and viewing genomic data

React component for visualizing CWL-like workflows (and similar data)

Providing insight into your application using AWS infrastructure.

various util modules shared amongst several projects in our organization

Developing tools for data submission, curation and control

This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.

Common components for use by 4DN and CGAP portal(s)

The SnoVault general purpose hybrid object-relational database

Cloud Formation templates for 4dn-dcic AWS environments